Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs62158068 chr2:129062947 C/T 3.59E-5 473 31.37 29.17 31.43 KM Plot
PRAD rs62177478 chr2:204822949 C/T 3.47E-5 489 30.87 31.63 20.33 KM Plot
PRAD rs62177479 chr2:204823459 C/A 3.08E-5 490 30.8 32.13 20.33 KM Plot
PRAD rs62197323 chr2:232063714 A/G 2.98E-5 477 31.87 29.1 29.72 KM Plot
PRAD rs62200478 chr20:6083100 G/T 2.81E-8 489 31 28.93 26.37 KM Plot
PRAD rs62342285 chr4:189925114 A/G 3.21E-6 472 31.65 27.77 28.77 KM Plot
PRAD rs62420360 chr6:111527321 G/T 5.48E-6 489 31.27 30.93 20.53 KM Plot
PRAD rs62420361 chr6:111536786 G/C 1.85E-6 487 31.28 31.15 20.53 KM Plot
PRAD rs62420363 chr6:111545437 G/A 9.14E-7 483 31.27 30.93 22.6 KM Plot
PRAD rs62421930 chr6:111509186 T/G 3.55E-5 493 31.28 30.38 19.1 KM Plot
PRAD rs62421931 chr6:111510014 T/C 3.55E-5 493 31.28 30.38 19.1 KM Plot
PRAD rs62421953 chr6:111525409 A/C 5.45E-6 489 31.28 30.45 20.53 KM Plot
PRAD rs62439722 chr7:6764940 G/A 4.94E-5 486 30.8 28.8 47.3 KM Plot
PRAD rs62439727 chr7:6774220 A/G 8.63E-5 491 30.97 30.23 32.23 KM Plot
PRAD rs62439737 chr7:6779810 A/G 9.08E-5 487 31.12 29.97 35.28 KM Plot